SNP Profiles of TSH 516   View Data

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 1234567891011121314
_Input profile
CGATACGTACCCAGCCAAAAAGAACCGG
1._GC-08-209-6-05
CGATACGTACCCAGCCAAAAAGAACCGG
2._RUQ_1018
__AC___AA____AA__
3._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
4._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
5._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
6._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
7._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
8._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
9._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
10._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
11._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
12._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
13._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
14._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
15._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
16._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
17._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
18._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
19._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
20._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
21._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
22._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
23._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
24._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
25._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
26._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
27._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
28._GC-08-209-6-05
CGATACGGACCGAACTAAAGAGACCTGT
29._GC-08-208-6-04
CGATACGGACCGAACTAAAGAGACCTGT
30._TSH_516
CGATACGGACCGAACTAAAGAGACCTGT
31._RUQ_1018
CGATACGGACCGAACTAAAGAGACCTGT
32._RUQ_1018
__ACGGACCGAACTAA_AGACCTGT
33._RUQ_1018
CGATACCCACCGAAAGAAAG_AC_AC
 1516171819202122232425262728
_Input profile
CCACTTAAGTCGCTCTCGATCTAGCTAG
1._GC-08-209-6-05
CCACTTAAGTCGCTCTCGATCTAGCTAG
2._RUQ_1018
CGAC_GGGTCG_____AG_AG
3._GC-08-208-6-04
CG_TT_GTCG_CTCGATCTAGCTAG
4._TSH_516
CG_TT_GTCG_CTCGATCTAGCTAG
5._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
6._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
7._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
8._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
9._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
10._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
11._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
12._GC-08-208-6-04
CGACTTAGGTCGCTCTCGATCTAGCTAG
13._GC-08-208-6-04
CGACTTAGGTCGCTCTCGATCTAGCTAG
14._GC-08-208-6-04
CGACTTAGGTCGCTCTCGATCTAGCTAG
15._GC-08-208-6-04
CGACTTAGGTCGCTCTCGATCTAGCTAG
16._GC-08-208-6-04
CGACTTAGGTCGCTCTCGATCTAGCTAG
17._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
18._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
19._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
20._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
21._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
22._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
23._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
24._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
25._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
26._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
27._TSH_516
CGACTTAGGTCGCTCTCGATCTAGCTAG
28._GC-08-209-6-05
CGACTTAGGTCGCTCTCGATCTAGCTAG
29._GC-08-208-6-04
CGAC_AGGTCGCTCTCGATCTAGCTAG
30._TSH_516
CGAC_AGGTCGCTCTCGATCTAGCTAG
31._RUQ_1018
CGACTTGGGTCGCTCTCGATCTAGCTAG
32._RUQ_1018
GGACTT_GTCG-____AGCT_
33._RUQ_1018
CGACAA_ACCGAGAGCGATAGAGAGAG
 2930313233343536373839   
_Input profile
AACTCTGTCCACCTCCCGAGCTX_XX_XX_X
1._GC-08-209-6-05
AACTCTGTCCACCTCCCGAGCTX_XX_XX_X
2._RUQ_1018
_CT_GT____CG__X_XX_XX_X
3._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
4._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
5._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
6._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
7._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
8._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
9._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
10._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
11._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
12._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
13._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
14._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
15._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
16._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
17._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
18._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
19._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
20._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
21._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
22._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
23._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
24._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
25._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
26._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
27._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
28._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
29._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
30._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
31._RUQ_1018
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
32._RUQ_1018
___GT___CTCGAG_X_XX_XX_X
33._RUQ_1018
AT__ACAGACAGAGCGAGAGX_XX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

1._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._TSH_516 RUQ_1018

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._TSH_516 GC-08-208-6-04

83.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSH_516

83.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

5._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

6._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

15._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

18._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

19._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

20._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

21._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

22._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

23._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

24._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

25._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

26._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

27._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._TSH_516 GC-08-208-6-04

82.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

30._TSH_516

82.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

31._TSH_516 RUQ_1018

82.1 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._TSH_516 RUQ_1018

77.3 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._TSH_516 RUQ_1018

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520